Installation of fs:fsData and proc:genProcData¶
Prerequisites:
install an XNAT instance https://wiki.xnat.org/documentation/getting-started-with-xnat
On XNAT VM:¶
Make a BACKUP of your $XNAT_HOME, postgres db, and tomcat deployment
Stop tomcat
Copy plugins to XNAT
Copy the files dax-plugin-fsData-X.Y.Z.jar and dax-plugin-genProcData-X.Y.Z.jar to ${XNAT_HOME}/plugins
The plugins folder is located in the dax package at the path dax/misc/xnat-plugins/files. You can download the files from github repository: https://github.com/VUIIS/dax .
Start tomcat and confirm that plugins are installed
ON XNAT webapp:¶
Log onto XNAT as admin
click Administer > Data types
click Setup Additional Data Type
for fs:fsData (NOTE: the fs:fsData datatype is deprecated. Install only if the need is known to exist)
4.a) select fs:fsData and valid without adding anything at first.
4.b) Come back to the new types and edit the fields:
enter "FreeSurfer" in both Singular Name and Plural Name field
enter "FS" in Code field
4.c) Edit the “Available Report Actions” by adding delete if you want to be able to delete assessor with the following values:
Remove Name: delete
Display Name: Delete
Grouping:
Image: delete.gif
Popup:
Secure Access: delete
Feature:
Additional Parameters:
Sequence: 4
4.d) click submit and then accept defaults for subsequent screens
for proc:genProcData
5.a) select proc:genProcData and valid without adding anything at first.
5.b) Come back to the new types and edit the fields:
enter "Processing" in both Singular Name and Plural Name field
enter "Proc" in Code field
5.c) Edit the “Available Report Actions” by adding delete if you want to be able to delete assessor with the following values:
Remove Name: delete
Display Name: Delete
Grouping:
Image: delete.gif
Popup:
Secure Access: delete
Feature:
Additional Parameters:
Sequence: 4
5.d) click submit and then accept defaults for subsequent screens
You are now ready to use the two assessor types fs:fsData and proc:genProcData